FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123167416
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTGTGGCA12108895098.31248712727724No Hit
CTGTGAGGCA2014760.1635789777387227No Hit
CTGTGTGTCA1737260.14104866826141746No Hit
ATGTGTGGCA1613250.13098025860995574No Hit
CAGTGTGGCA1581630.12841302118410927No Hit
CTGTGTGGAA1437640.11672242925028159No Hit
NTGTGTGGCA1366590.1109538581210472No Hit
CTGTTTGGCA1351100.10969622030553926No Hit
GTGTGTGGCA1333220.10824453766246098No Hit
CGGTGTGGCA1263620.10259369247463956No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)