FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83899965
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAAACACAA8252296498.35875855252144No Hit
AGAACCACAA3185700.3797021846195049No Hit
AGAAAAACAA1180390.14069016596133263No Hit
ATAAACACAA1120960.13360673034845724No Hit
CGAAACACAA1075090.12813950518334544No Hit
AGAAACAAAA992670.11831590156205667No Hit
AGAAACACAG875530.10435403638130243No Hit
NGAAACACAA846920.10094402303981892No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)