FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81643156
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCCTAC8069233698.83539533920026No Hit
CGAATCCTAC1344340.16466046461996153No Hit
NGACTCCTAC884120.10829076720160107No Hit
CGACTCCTAA862710.1056683796006122No Hit
CGACTACTAC824930.10104092497355197No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)