FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81791503
Sequences flagged as poor quality0
Sequence length10
%GC29

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATGATTCA8097107498.99692636776707No Hit
TGATGATTAA2134280.2609415308091355No Hit
GGATGATTCA1067640.13053189644895022No Hit
TGATGAATCA1028750.12577712381688352No Hit
TTATGATTCA821610.1004517547501236No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)