FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163140270
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCCTAC16116938198.79190527268345No Hit
CGACTCCTAA2841120.17415197363593918No Hit
CGACTACTAC2013970.12345020637761603No Hit
AGACTCCTAC1686080.1033515513980699No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)