FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences126092794
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAACACA12427149998.55559152730012No Hit
ATCGAACAAA3135110.24863514405113427No Hit
ATCGACCACA1914640.15184372867493126No Hit
ATAGAACACA1673320.13270544231100154No Hit
ATCGAACCCA1601890.127040566648083No Hit
ATCGAAAACA1375240.10906570917922558No Hit
NTCGAACACA1310920.10396470396238502No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)