FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127352561
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAACACA12562513298.64358518867948No Hit
ATCGAACAAA2894820.22730756078003017No Hit
ATCGACCACA1683760.132212496299937No Hit
ATAGAACACA1600380.1256653174018228No Hit
NTCGAACACA1517950.11919273456935035No Hit
ATCGAACCCA1498880.11769531670431033No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)