FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59155837
Sequences flagged as poor quality0
Sequence length10
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTATCTAT5845809398.82049847422495No Hit
CACTATCTAT1172930.1982779822724848No Hit
CCCTATCTAG789970.13354049913958618No Hit
NCCTATCTAT752160.12714890670890178No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)