FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31385346
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTATCTAT3075002397.97573364333788No Hit
CCCTCTCTAT1862300.5933660887472771No Hit
CCATATCTAT544070.17335160173158518No Hit
CCCTATCTAA517100.16475841942287334No Hit
CCCTATCTAG476530.15183200465593083No Hit
CCCTAACTAT412240.13134792268978013No Hit
CACTATCTAT373160.11889625177304082No Hit
NCCTATCTAT317180.10105990228688254No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)