FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206309

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206309
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35838951
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTATCTAT3518990298.18898438182524No Hit
CCCTCTCTAT1638230.45710880321246006No Hit
CCCTATCTAA564360.15747112687533737No Hit
CCATATCTAT554570.1547394621008857No Hit
CCCTATCTAG539870.15063777954884897No Hit
CCCTAACTAT476160.1328610315631169No Hit
NCCTATCTAT416360.11617527533102183No Hit
CACTATCTAT378220.10553322277764211No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)