FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90726359
Sequences flagged as poor quality0
Sequence length10
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTGGAGAG7704995684.92565650077503No Hit
AAGTGGCGAG1215113113.393165044791447No Hit
AAGTGGAGAA2410650.2657055817703431No Hit
AAGTGGATAG1762170.19422911041762406No Hit
ACGTGGAGAG1712470.18875109933597137No Hit
CAGTGGAGAG1570300.1730809014390184No Hit
AAGTGGAGAT1177950.129835475928225No Hit
TAGTGGAGAG1008010.11110442556170473No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)