FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91472475
Sequences flagged as poor quality0
Sequence length10
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTGGAGAG7812909185.4126785133998No Hit
AAGTGGCGAG1188975312.99817568071707No Hit
AAGTGGAGAA2431670.26583625292745167No Hit
AAGTGGATAG1643100.17962780606953077No Hit
ACGTGGAGAG1561390.17069506428026573No Hit
CAGTGGAGAG1353630.1479822208811995No Hit
AAGTGGAGAT1103710.1206603407199816No Hit
TAGTGGAGAG944270.10322996070675906No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)