FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19788436
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGCCTTT1914159396.73120705446352No Hit
GAGAGCCTTT2347441.186268586360236No Hit
TAGTGCCTTT593880.30011467303429135No Hit
TAGATCCTTT534530.27012240886546063No Hit
TAGAGACTTT444850.22480301121321564No Hit
TATAGCCTTT381420.19274893680329258No Hit
TAGAGCCTTG346180.17494055619150498No Hit
TAGAGCCTTA257690.1302225198595786No Hit
TAGAGCATTT229020.11573426015072641No Hit
AAGAGCCTTT201890.10202423273875713No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)