FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89269097
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCCGTCA8803788798.62078810990997No Hit
CATTACGTCA2017690.22602334601861157No Hit
CCTTCCGTCA1528030.1711712172914665No Hit
CATTCAGTCA1282300.14364433416415087No Hit
CATTCCGTAA1092570.12239061855862617No Hit
NATTCCGTCA973190.10901756965235125No Hit
AATTCCGTCA955760.10706504626119384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)