FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89254760
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCCGTCA8813834998.74918603780908No Hit
CATTACGTCA1731740.19402214514945756No Hit
CATTCAGTCA1182540.13249041283624538No Hit
CCTTCCGTCA1119520.12542972498049404No Hit
NATTCCGTCA1098370.12306010346114873No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)