FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53031182
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCCGTCA5222728698.4841069542821No Hit
CCTTCCGTCA1606970.30302360599844824No Hit
CATTCAGTCA859040.1619877150767637No Hit
CATTACGTCA753420.14207113090558682No Hit
AATTCCGTCA636480.12001995354355857No Hit
CATTCCGTAA605520.11418187888024069No Hit
CAATCCGTCA542100.1022228770989868No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)