FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52758947
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACAATCGATC5111108196.8766131742546No Hit
ACCATCGATC9583941.8165525555314816No Hit
ACAATCGATA2884880.546803938296949No Hit
ACAAACGATC671450.1272675135081828No Hit
AAAATCGATC598410.11342341612693672No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)