FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52758947
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCCGTCA5203300098.62403053646996No Hit
CCTTCCGTCA1260240.23886754221990064No Hit
CATTCAGTCA739890.1402397208572036No Hit
CATTACGTCA638560.12103349977777228No Hit
NATTCCGTCA618420.11721613776711655No Hit
AATTCCGTCA569770.1079949529697778No Hit
CATTCCGTAA551200.10447517081794676No Hit
CAATCCGTCA542900.10290197793371425No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)