FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98061996
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTAACACT9651675798.42422236643031No Hit
AGGTAACAAT2101500.2143032046788034No Hit
AGGTCACACT1686200.17195244526737963No Hit
AGGTACCACT1453410.14821338125730177No Hit
AGGGAACACT1380210.1407487157410094No Hit
NGGTAACACT1046630.10673145996334808No Hit
AGGTAAAACT999560.10193143529324042No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)