FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98168483
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTAACACT9678152398.58716366229271No Hit
AGGTAACAAT1770270.18032977040095444No Hit
AGGTCACACT1479810.1507418628441065No Hit
AGGGAACACT1215410.12380857510042201No Hit
NGGTAACACT1196150.12184664196145316No Hit
AGGTACCACT1122810.11437581244888953No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)