FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93333279
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTAGACCAT9176847498.32342223827794No Hit
GTTAGACCAT4233640.4536045497769343No Hit
TTTAGACAAT1789620.1917451116230471No Hit
TTTAGTCCAT1047540.11223649390910181No Hit
NTTAGACCAT1022710.10957613521753586No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)