FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119447435
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGCGAG11764432998.49046067837287No Hit
CTCTAGCGAA2971040.24873200500287007No Hit
CTCTCGCGAG2346020.1964060592845715No Hit
CTCTAGAGAG1336120.11185840867993524No Hit
CTCTAGGGAG1324270.11086634049529821No Hit
CTCTATCGAG1202570.10067775837965881No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)