FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119447435
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAAGATA11762357498.47308483434574No Hit
GTTGAAGATA2457550.20574322085694013No Hit
GATGAAGATG2000420.1674728302035117No Hit
GAGGAAGATA1894190.15857937845211995No Hit
GAAGAAGATA1629730.1364390955737141No Hit
NATGAAGATA1468350.1229285501191382No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)