FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences277955995
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGCGAG27373790898.48246230486953No Hit
CTCTAGCGAA7378930.265471158483198No Hit
CTCTCGCGAG6964480.25056052487732816No Hit
CACTAGCGAG3820830.1374616870558953No Hit
CTCTATCGAG3605700.1297219727173001No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)