FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences278188926
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGCGAG27413585198.54304948141609No Hit
CTCTAGCGAA7351370.2642581825848812No Hit
CTCTCGCGAG5958050.21417279564895403No Hit
CACTAGCGAG3974880.14288419230605895No Hit
CTCTATCGAG3416070.12279676438306535No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)