FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences278188926
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAAGATA27398743698.48969904718638No Hit
GATGAAGATG4979340.17899130894951584No Hit
GATGAATATA4648460.1670972337698302No Hit
GATTAAGATA4018500.14445219145782964No Hit
GTTGAAGATA3840540.13805510000782706No Hit
NATGAAGATA3110330.1118063916030935No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)