FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90392619
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCGAATC8914330998.61790706606254No Hit
TACTCGAATC1601670.1771903522344009No Hit
TCCTAGAATC1352220.14959407249833087No Hit
TCCTCGAATA1153430.12760223265574372No Hit
TCCTCTAATC1073710.11878292850437269No Hit
NCCTCGAATC961500.1063693043344612No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)