FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90405536
Sequences flagged as poor quality0
Sequence length10
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCGAATC8922745298.69688953561428No Hit
TACTCGAATC1612460.17835854653856595No Hit
TCCTAGAATC1162010.1285330579755647No Hit
NCCTCGAATC1092120.12080233670646011No Hit
TCCTCTAATC1017650.1125650092932362No Hit
TCCTCGAATA940180.10399584379434464No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)