FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87796074
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGGTTGGC8648891798.51114413157016No Hit
CAGGGTTGTC1955750.2227605302715472No Hit
CCGGGTTGGC1628210.18545362290345696No Hit
GAGGGTTGGC1412130.16084204403035152No Hit
CAGGGTTGGA944980.10763351445532746No Hit
NAGGGTTGGC917180.10446708585169764No Hit
CAGGGTTTGC900080.10251939055953686No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)