FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88193217
Sequences flagged as poor quality0
Sequence length10
%GC69

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGGTTGGC8698121998.62574692110393No Hit
CAGGGTTGTC1641580.18613449603499552No Hit
GAGGGTTGGC1387090.157278535377613No Hit
CCGGGTTGGC1266060.1435552577699938No Hit
NAGGGTTGGC1060570.12025527994970406No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)