FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104179951
Sequences flagged as poor quality0
Sequence length10
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGCCCTGT10264367298.52536022022126No Hit
GTAGCCCTGA3568170.3425006410302497No Hit
GTAGCCCGGT2575870.2472519880528644No Hit
GTAGACCTGT1504790.14444141944355493No Hit
GTAGCCATGT1217610.11687565489448158No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)