FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98382104
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTTAGGG9463702896.19333613763739No Hit
GACGTTAGGG10612901.0787429388580672No Hit
GAAGGTAGGG7803720.7932052357814995No Hit
GTAGTTAGGG4934750.5015902079101704No Hit
GAAGTTAGTG3146170.31979088391929494No Hit
GAAGTTAGGT1989320.20220344139011298No Hit
GAAGTTATGG1086020.11038796242861404No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)