FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98950918
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTTAGGG9546703396.47917869746291No Hit
GACGTTAGGG9923961.0029174261930547No Hit
GAAGGTAGGG6607190.6677239719999364No Hit
GTAGTTAGGG5283410.5339424946012122No Hit
GAAGTTAGTG2618620.2646382724817166No Hit
GAAGTTAGGT1693540.1711494985827216No Hit
NAAGTTAGGG1128420.1140383558644701No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)