FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97917659
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGACAGTC9619510598.2408137433106No Hit
CTTGACAGTC3512900.3587606194711007No Hit
ATTGAAAGTC2222370.22696314665774436No Hit
ATTGACATTC1483350.15148952856399478No Hit
ATTGACAGTA1375100.14043432145370224No Hit
ATTGACCGTC1107320.11308685392488806No Hit
AGTGACAGTC1079960.11029266947650371No Hit
NTTGACAGTC1041110.10632505011174748No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)