FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97756449
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGACAGTC9626413698.47343779846177No Hit
CTTGACAGTC2476540.2533377618902667No Hit
ATTGAAAGTC2044610.2091534646476367No Hit
ATTGACATTC1198950.12264663991630874No Hit
NTTGACAGTC1190310.12176281075839815No Hit
ATTGACAGTA1083920.1108796413012097No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)