FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61858916
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGACAGTC5998502796.97070507992737No Hit
CTTGACAGTC7116251.1504000490406265No Hit
ATTGACATTC1878570.3036862139646935No Hit
ATTGAAAGTC1122050.18138856490792693No Hit
AGTGACAGTC1029500.1664271000157843No Hit
ATTGACAGTA1019810.16486063221670422No Hit
ATTGCCAGTC976840.15791418006742955No Hit
ATTTACAGTC918940.14855417123701295No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)