FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60827590
Sequences flagged as poor quality0
Sequence length10
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGACAGTC5922881597.37162856526126No Hit
CTTGACAGTC5474650.9000274382069058No Hit
ATTGACATTC1608160.26438002886519096No Hit
ATTGAAAGTC978250.16082340266974246No Hit
AGTGACAGTC848220.13944658994380676No Hit
ATTGACAGTA843240.13862788251186672No Hit
ATTTACAGTC841120.13827935645650272No Hit
ATTGCCAGTC789370.12977170392580079No Hit
NTTGACAGTC669550.11007340583442479No Hit
AATGACAGTC624320.10263763532304997No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)