FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112385551
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGGTAGTA11028127398.1276258546795No Hit
AAAGGTATTA2691060.23944893058361214No Hit
ACAGGTAGTA1853680.16493935239059335No Hit
CAAGGTAGTA1842540.16394812176522586No Hit
AAAGGTAGTG1837570.16350589409843264No Hit
AAAGGAAGTA1478750.13157830226769987No Hit
AAAGGTAGAA1466100.1304527127335079No Hit
NAAGGTAGTA1171030.10419755827864384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)