FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113944571
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGGTAGTA11190870698.21328477334826No Hit
AAAGGTATTA2317520.20339012027172404No Hit
AAAGGTAGTG1860310.163264470055357No Hit
AAAGGAAGTA1624550.14257370805319017No Hit
AAAGGTAGAA1570240.1378073554728641No Hit
ACAGGTAGTA1561120.13700696630820614No Hit
CAAGGTAGTA1542870.13540531035919212No Hit
NAAGGTAGTA1364560.1197564735225516No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)