FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163188345
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG5010600.30704398650528625No Hit
ACCTGCTTGCGTACAT3779260.2315888429409588No Hit
CTCATAACTGGTTGAG3372620.20667039671246132No Hit
AAGGCTTACAAATGCA2838410.17393460298895733No Hit
TTAGTCTTGCGGTTGC2711670.16616811696938283No Hit
ATAGGAAACCTGGGTC2576780.1579022080283981No Hit
CCGTTGTACTAACGAA2498690.15311693981576932No Hit
CTGAGATACCCTAACA2488200.1524741243009726No Hit
GGACACAGAACAGATA2466470.1511425341068322No Hit
ATTCAGGTGAAAGTAC2418520.14820421152013033No Hit
ACAAAGAACCACTCAA2172480.1331271543932871No Hit
ACTCCGTACCCTGAGC2097440.12852878678314925No Hit
AATAGGAACCTGAGAG2039280.12496480676974817No Hit
CTCCAACTGCCCGAGT2027120.12421965551522691No Hit
ACACATCGACATACTG2023910.12402295029096595No Hit
CTAAGTCGACATTCAG2020060.1237870265796249No Hit
CTACCTCGATTGGTTG1985360.12166064923325252No Hit
CCGTTTGTGCGATGTT1971190.12079232741774543No Hit
CTGTAACGAACAGGCA1948610.11940865017045182No Hit
GCGCGAACTCCTGTGG1893440.11602789402637792No Hit
AAGATCAGATGCTGGC1892470.1159684535068972No Hit
TGTTAACCTGTCCCGA1876890.11501372846204183No Hit
CTGTTGCTGTTTCTGT1875900.11495306236483985No Hit
CGCTTACTGTGTGCTA1849220.11331814168468955No Hit
TACTGGCCTTCCTACC1842620.11291370103667636No Hit
GGGTGAATGAGGACCA1833510.11235545038464603No Hit
GAGAGGTTGGTGGTGA1814540.11119298991603843No Hit
AATCTCTTGTCATTTC1813350.11112006804162393No Hit
CGAAACGGACGCACTG1812860.11109004138745325No Hit
CTACTCTCTATAGGTA1790410.10971433039534777No Hit
TAGCTTTACTTTGGGT1772030.1085880244695171No Hit
AAGTGCTTGACGCGAA1757550.10770070619933059No Hit
CCCATGTACACAACAA1743080.10681400071800472No Hit
GCGTTGTCTTAATCGC1721650.10550079418968308No Hit
AATCCAGACCCTTCCA1720930.105456673391718No Hit
GGTGTAACTCGCAAAG1709240.10474032321364617No Hit
TACCTTCCTACAGGTG1709130.1047335825361793No Hit
CGAATTTCTGAGCTGA1706940.10459938177570219No Hit
AGCGTATACGGAATAT1697840.10404174391253247No Hit
TAATAGGGATGACTCA1688180.10344978987316773No Hit
CGATCAAACAATCGCT1687060.1033811575207776No Hit
AGGGAGTTGTAGCGAG1664940.10202566856107279No Hit
TTGTACTACCTTGTGA1663330.101927009554512No Hit
TACCACCACTAATGCC1650200.10112241778051001No Hit
CGCTAGTCTGCCCTAG1645580.10083930932690077No Hit
CGCATTCTGGCATGAG1645330.1008239896053851No Hit
GCTGGAAGAATCATCG1640080.10050227545355644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)