FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164387398
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCGATT4686559028.50923523955285No Hit
TCCGCTAC4134126325.148681409264718No Hit
CATATGCG3824142923.262993067144965No Hit
GGATACGA3582307521.79186205015545No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)