FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164387398
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG5113590.31106946531266344No Hit
ACCTGCTTGCGTACAT3827080.232808600085026No Hit
CTCATAACTGGTTGAG3382970.20579253891469226No Hit
AAGGCTTACAAATGCA2863100.17416785196636544No Hit
TTAGTCTTGCGGTTGC2714410.165122754726004No Hit
ATAGGAAACCTGGGTC2613780.15900123925557846No Hit
CCGTTGTACTAACGAA2535500.15423931705519178No Hit
CTGAGATACCCTAACA2505400.15240827645437882No Hit
GGACACAGAACAGATA2496440.1518632225080903No Hit
ATTCAGGTGAAAGTAC2441770.14853754178893933No Hit
ACAAAGAACCACTCAA2191930.13333929648305523No Hit
ACTCCGTACCCTGAGC2103830.12798000489064254No Hit
AATAGGAACCTGAGAG2068010.12580100574376146No Hit
CTCCAACTGCCCGAGT2049610.12468169853263326No Hit
CTAAGTCGACATTCAG2047760.12456915949238395No Hit
ACACATCGACATACTG2033480.12370047976548665No Hit
CTACCTCGATTGGTTG2005610.12200509433210932No Hit
CCGTTTGTGCGATGTT1995530.12139190864253475No Hit
CTGTAACGAACAGGCA1969910.11983339501486605No Hit
AAGATCAGATGCTGGC1918560.1167096762490273No Hit
GCGCGAACTCCTGTGG1917610.11665188593106145No Hit
TGTTAACCTGTCCCGA1907550.11603991687975984No Hit
CTGTTGCTGTTTCTGT1891300.11505139828297543No Hit
CGCTTACTGTGTGCTA1878400.11426666659691273No Hit
TACTGGCCTTCCTACC1857340.11298554649548014No Hit
GGGTGAATGAGGACCA1851340.11262055501359053No Hit
GAGAGGTTGGTGGTGA1848210.11243015112387142No Hit
AATCTCTTGTCATTTC1832970.11150307275987177No Hit
CGAAACGGACGCACTG1826820.1111289564909349No Hit
CTACTCTCTATAGGTA1813380.11031137557150214No Hit
TAGCTTTACTTTGGGT1804040.1097432054980273No Hit
AAGTGCTTGACGCGAA1767810.10753926526655042No Hit
AATCCAGACCCTTCCA1752630.10661583681736966No Hit
GCGTTGTCTTAATCGC1746070.10621677946383701No Hit
CCCATGTACACAACAA1743560.10606409136057984No Hit
GGTGTAACTCGCAAAG1738100.10573194911206028No Hit
TACCTTCCTACAGGTG1722950.10481034562028899No Hit
CGAATTTCTGAGCTGA1722740.10479757091842283No Hit
TAATAGGGATGACTCA1714730.10431030729010017No Hit
AGCGTATACGGAATAT1706440.10380601072595601No Hit
CGATCAAACAATCGCT1695020.10311131027209276No Hit
TTGTACTACCTTGTGA1676510.10198531155046325No Hit
GCTGGAAGAATCATCG1674640.10187155587194098No Hit
CGCATTCTGGCATGAG1668330.1014877064968204No Hit
AGGGAGTTGTAGCGAG1665920.10134110158492805No Hit
TACCACCACTAATGCC1665040.10128756950091758No Hit
CGCTAGTCTGCCCTAG1664640.10126323673545828No Hit
GATCTGCCTCGGAATG1656800.10078631453245583No Hit
TCGACTCTGACTAGTC1647470.10021875277811745No Hit
ACTGCTAGATGACCTA1644340.10002834888839837No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)