FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63518591
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGAGCG1734803627.311745627354988No Hit
CGGTGAGC1643103225.868067507983604No Hit
ATAACCTA1483218523.35093516164425No Hit
GATCTTAT1409002122.182515037211704No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)