FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006206470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63518591
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCACTTACCGACTAT4053750.6381989802009305No Hit
TAGCGCGACCAAGTAA3691390.5811511152695437No Hit
CCTACGTACAGTCGGA2093440.3295790991333545No Hit
ATTCCAGGAACCGTTA2075390.3267374114139276No Hit
ATCGGGCACGATCATC2060270.3243570059669617No Hit
GGGTGAAACCATGCGC1990490.3133712459081468No Hit
AGTGGTACTATGGCCC1990330.31334605643251756No Hit
TAGTCCGCTTCTTTGT1982840.31216687410462235No Hit
GGGGGGGGGGGGGGGG1973880.3107562634693833No Hit
CGGTCGATGGCACGCT1881870.2962707406403268No Hit
TTCCTAAACCAGGTGA1813190.28545815822646314No Hit
TGGCGTTCTACCATGT1798110.2830840501484046No Hit
CTATCTATGTAGGCGA1673470.2634614486332041No Hit
CTAATCACTCGAGTTT1673060.2633969006019041No Hit
AATGGCTACAGCCATT1626120.2560069381891673No Hit
CCCTTGCCTCCAGGCT1418250.2232810863200665No Hit
GCAGTCGACGAACAGC1352360.21290774538748822No Hit
TCGACTCACGCCGTTG1306380.20566891982852706No Hit
TCGTGAATGGCGGTTC1278920.20134577607365378No Hit
CTCTTTCTGTGTGGGA1192830.18779226384288025No Hit
CCAACTCACGCACGCT1184000.18640211965658998No Hit
TTATCGACTACCATGT1132850.17834935916635808No Hit
ACCGGCTGATCGACAT1082540.17042884342317982No Hit
CCCAGGATGAAGGTGC1062570.1672848819962017No Hit
CTCGGTTACAGACTTC1053540.16586325096537485No Hit
GTCGAATACCATCTTT1030310.16220605397245036No Hit
CTCGGTTTGAGACTTC1026950.16167707498423572No Hit
TTAGCCAGACCACAAT1022090.16091194466199668No Hit
ACGAGGCCTGCCGCTA1013350.15953596955574786No Hit
GGTTCAATGTCCCGTT980950.1544351007408209No Hit
CTATAGCGATAACTCG979430.15419580072234285No Hit
CCAGCTTTGGTTCTCC977890.15395335201941113No Hit
CGTGTCTTGCGTTCTC975800.15362431449400382No Hit
AGCTCTGCTGAAATCA939060.14784018115263292No Hit
AAGTGGCGAATGAATG921150.14502053422438163No Hit
AACACTGACGAACAGC918440.1445938874809109No Hit
TAAGCTGTGTCGCAGC917670.14447266312944504No Hit
AGTGACACTGCTAGAG914400.14395785322127186No Hit
TGCTTGCACGACGCCT907900.1429345307738328No Hit
TTGCAGATGCCTACGG904260.14236147020326695No Hit
GAAGCCCTGCAATAGA898940.14152392013859377No Hit
CAACGAACTCTGGGTC893630.14068794441614738No Hit
CTTCCACGACAGTCCG887600.13973861605336932No Hit
CCCTATCGAGGTAGAC885880.1394678291903547No Hit
CTGGTGGACTAACGAA875460.13782736458999853No Hit
TCGTGAATGAGCCATT875390.13781634419441074No Hit
GCGCGAACTTTACGAC867540.13658048554634974No Hit
TAGCATTCTGCGCTGT865460.13625302236316925No Hit
GTCACCTACTTGACAC861380.13561069073462287No Hit
CAAGGGATGCGAAAGC855240.1346440446073497No Hit
TTGCGTCACTCGTAGT822580.12950224289452517No Hit
CAACAACACCAAGTTC822430.12947862776112273No Hit
TGGCAATTGGTTCTCC816720.12857967834960318No Hit
AAAGGATACAGCCATT814430.12821915397965927No Hit
AGAGGGACTGCGAGTA806270.12693449072256657No Hit
CCTGCTATGGGTTTGT801280.12614889395137874No Hit
TAACCAGACCCACAAT801070.12611583276461533No Hit
TGTTGTACTACGAGCA780000.12279869369268598No Hit
TTTACCATGTACGATC769770.1211881415946396No Hit
GCTACTGCTTCCCGTT768850.1210433021097713No Hit
CACTATACTGTTTACG763850.12025613099635662No Hit
ATGCAAAGACGACTAT759980.1196468605545737No Hit
TCTACGCACGAAGGTC758540.11942015527391027No Hit
TGCTGCTACGCACCCA757730.11929263355353711No Hit
TAGAACCACGAAGGCT755150.11888645325901515No Hit
CCCATGTACTCTGCAA753420.11861409205377368No Hit
CGTACAAACAGCTTGT751650.11833543347962489No Hit
CAATCGCCTCCTTCCA742580.1169075050798907No Hit
CCTCCCTTGGAAACAT738390.11624785568684923No Hit
AAACACGCTCACTCAA737860.11616441554882727No Hit
CCTCTTGGATAACGAA735210.1157472148587175No Hit
GGTATTTCTTATCTGG734970.1157094306452736No Hit
AAACAACGACGACATT731410.11514896481252238No Hit
GCTACGGACCAAGTTC731100.11510016020349065No Hit
GGTGCGTTGAGGGCTA728020.11461526279762724No Hit
AGTCCCACTCAATGAA726810.11442476738818087No Hit
TACCACCACGACTCGC725410.11420435947642478No Hit
ACCGTTGCTTCTGGAT722370.11372575943946867No Hit
ATAAGACGACTTCACC722100.11368325219934428No Hit
TGCTTCTCTCCTGCGA722040.11367380614598331No Hit
ACAGCCGACTCATGCA720690.11346126994536135No Hit
ATACATCCTCCTAGGC717790.11300471069958086No Hit
CTACCTGTGCCTAGTA716640.11282366134349549No Hit
TCGGGTTCTTCAATGC715530.11264890935631741No Hit
CGATCAAACAGCAATA713770.11237182512439547No Hit
CAAACCTGAGCCCTTT713170.1122773645907857No Hit
CATGGATTGCTGCCAG712740.11220966787503205No Hit
CCAACGGTGGCTCCTT712470.11216716063490766No Hit
CTCTCTTTGTTGACCA712130.11211363299919545No Hit
CCATGATGATGCGTGC709710.11173264218030277No Hit
CAGAGTACTTTTCTTG709180.11164920204228082No Hit
CACATATCTAGCAAGC708120.1114823217662369No Hit
CGTGGAAGAGCCCAAC704860.11096908620029057No Hit
GTGATAAGACGGTTGC702930.1106652381505125No Hit
AACAGCTACTTACGCA699960.1101976585091442No Hit
GAGTTACTGTGACCTA697650.10983398545474662No Hit
CTCTGACTGGAACCTT697150.10975526834340517No Hit
TCCTGTGACAACGTGG696760.10969386899655881No Hit
TGCCATCTGACCTAGT696410.10963876701861978No Hit
CCGACAGTGGCGCACT695380.10947660976925637No Hit
TACCCGGGAGCTCTTC695240.10945456897808077No Hit
GTTACCCTGGAACCTT694120.10927824264867587No Hit
CAGACTCCTCCGTTAA688320.10836512415711488No Hit
CTCTGGACTGCCCTGA683860.10766296752394902No Hit
GCTGAATTGCATGCTA683620.10762518331050512No Hit
AGAGAATACTAGACAA679960.1070489740554856No Hit
TCCGTTGACTACAGAA679860.10703323063321729No Hit
AATTCTGCTAATCGAA679510.10697812865527827No Hit
ACAAGACCTAGTCGGA677510.10666326020991242No Hit
TGAACTGTGTGGTCCG676010.10642710887588801No Hit
GTTTCCCGAAGCTTTG670850.10561474828684408No Hit
CAACAACACCAGGGAT667530.10509206666753676No Hit
CCTGAGGACCGAGGTA662650.10432378766084406No Hit
CGCATCGGAACGAGCA656340.10333037771571477No Hit
TACCACCTGTTGACAC655800.10324536323546597No Hit
GGTACTCCTGCCCAAC652740.1027636145140562No Hit
TGTTCCTCTGCCAGCT652500.1027258303006123No Hit
TCTTGAACTCGAGGTA651880.10262822108254889No Hit
ATCTTACTGTATCTGG651050.10249755067772205No Hit
CGATATTCTACAGGCA649270.10221731776134645No Hit
CTCTGCAACTTGTGAC648720.10213072893887082No Hit
GTACTGAACTCGAGAG647280.10190402365820742No Hit
AAGACAAACCCCGAGT646720.10181586049350497No Hit
CCTACGGGATGGCTTA645430.101612770346244No Hit
TAGTTGCGAATAGCAA644290.10143329533238545No Hit
AAATGCCTGTTTCGCC639470.10067446237905373No Hit
CACATATCTCAGTCTA639320.10065084724565129No Hit
CAATGCCCTTTTCGCC638720.1005563867120415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)