FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences296086459
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG9413270.3179230158580133No Hit
TCCATGGCTAACTAGA5302580.17908890591987525No Hit
AGGCCAAGAACACCGC4733650.15987391034319473No Hit
TTCGTCCGAGCGCTGT4526110.1528644712522973No Hit
AACCGCTCTCAGCAAG4476560.15119097357978128No Hit
AACTTGGACATGTGGG4404680.14876330430227477No Hit
TGGACATACGCCCTGA4029260.13608389973686705No Hit
TACCGCTTGGTGAGCA3867040.13060509464230516No Hit
CCTTCTTTGGTTTGGT3773560.12744790872047276No Hit
TACGCCTTGAAATCGA3742930.12641341359011626No Hit
CGTCGTACTGATGGAC3590460.12126390420306252No Hit
CGGTTCACTCGGTACC3561750.1202942549966461No Hit
GGACATTTGGACTCGC3559210.12020846924310037No Hit
TGAGGTACTTGGCTTA3541650.11961539923039843No Hit
GAGTTGTTGAGCCATT3538580.11951171329993177No Hit
TCCGTTGTGGTTGACT3519400.1188639295389054No Hit
CTGCTAGCTATCGGTT3409410.11514913621902582No Hit
GTCGTGGTGTTGGCGC3380280.1141653019667475No Hit
TGGAATGCTGCTCAGC3298990.11141982011409715No Hit
ACTGTGATGTGAGTAA3284730.11093820403316722No Hit
GGTATTTCTGCGTATT3226230.10896242978811807No Hit
GTCTTGCACCGGGTAA3129810.10570594854525245No Hit
CGACGACACGCCCTGA3067700.10360825045362847No Hit
CTACCTGTGAGGTAAT3019550.1019820362673188No Hit
CTCTGACTGGACGCCT2982240.10072193135992077No Hit
AACTTGGACAAGGCTG2973600.10043012470219044No Hit
GGCTTCTACCTGAGAG2970620.10032947842440847No Hit
CGACCTTACTGGGCCT2965840.10016803909293265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)