FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences297996107
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG9550680.3204968043424809No Hit
TCCATGGCTAACTAGA5313020.17829159090323282No Hit
AGGCCAAGAACACCGC4762010.1598010808913017No Hit
TTCGTCCGAGCGCTGT4573780.15348455542071895No Hit
AACCGCTCTCAGCAAG4525780.15187379612311513No Hit
AACTTGGACATGTGGG4449880.14932678298377905No Hit
TGGACATACGCCCTGA4078210.1368544723975203No Hit
TACCGCTTGGTGAGCA3911430.13125775498805425No Hit
CCTTCTTTGGTTTGGT3815170.12802751144665123No Hit
TACGCCTTGAAATCGA3780450.12686239555471776No Hit
GAGTTGTTGAGCCATT3631530.12186501483390183No Hit
CGTCGTACTGATGGAC3612400.12122306013883598No Hit
GGACATTTGGACTCGC3599280.12078278593082425No Hit
CGGTTCACTCGGTACC3597810.12073345642733514No Hit
TGAGGTACTTGGCTTA3571050.119835458118921No Hit
TCCGTTGTGGTTGACT3556450.11934551883256649No Hit
CTGCTAGCTATCGGTT3450860.1158021839526917No Hit
GTCGTGGTGTTGGCGC3416560.1146511622046123No Hit
TGGAATGCTGCTCAGC3319150.11138232755503749No Hit
ACTGTGATGTGAGTAA3306310.11095144944292847No Hit
GGTATTTCTGCGTATT3279230.11004271273919695No Hit
GTCTTGCACCGGGTAA3165690.10623259585065654No Hit
CGACGACACGCCCTGA3094090.10382987989839747No Hit
CTACCTGTGAGGTAAT3045330.1021936169119149No Hit
GGCTTCTACCTGAGAG3033690.10180300778224596No Hit
CTCTGACTGGACGCCT3013850.1011372272725697No Hit
AACTTGGACAAGGCTG2999180.10064493896223953No Hit
CGACCTTACTGGGCCT2996990.10057144806928636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)