FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences277785189
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG11919340.42908479184611964No Hit
CTATGTTACCCGTGAC4290430.15445135917595665No Hit
GTTGATGACAATCGAA4065090.14633933560799026No Hit
GAAGTTCTGCAGGTGA3964980.14273547176051923No Hit
CGCCCTTCTTGCTCAA3911030.1407933235778096No Hit
CTAACTGGAGCAGGAT3859400.13893469316681242No Hit
TTCTCTCTGGCCCTGA3710490.1335740761902176No Hit
ATGTTTCACAATGCTC3592010.12930890998655797No Hit
CTACATTACCAGGTGA3564660.12832433625537898No Hit
TCGGGTGACACTCGAT3480720.1253025768771279No Hit
AGGAAGCACTTACGAC3369710.12130632349876654No Hit
CATTCTATGACGAGCA3259250.11732986959214733No Hit
CGATATTCTCATGCAT3224610.11608286286278569No Hit
GTTGTGATGGAACCTT3185550.11467674037869599No Hit
CAGTTGATGTGGGCCT3172920.11422207250941661No Hit
AGAACCTTGGGACACA3167150.11401435805132144No Hit
TCCGCCTCTCCTCAAA3152220.11347689239112026No Hit
TAGCAGACTCGGTTTA3091770.11130075045145764No Hit
AAGGCGATGTACTTTC3058390.11009910251190536No Hit
GTAGCATACAGTTGAA3057890.11008110299213973No Hit
AGGTTACTGCCATAAC3016520.10859182272673293No Hit
CAACAACACAACCCGC2988110.10756909001365081No Hit
CTCCAACTGGGACCAA2955830.10640704101758283No Hit
AGTGCATTGGCCAGCT2943000.1059451733403972No Hit
CATGCAAACCCTTCCA2932460.1055657434637381No Hit
CGCCCTTCTGCTGAGA2925330.10530907031188046No Hit
ACGGCCATGTGAACAA2885350.10386982871142204No Hit
CATCAGTGACTGGCAC2838350.10217787385345443No Hit
TTGGCAAACGCAGGAT2786890.10032536327917757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)