FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences279845171
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGTAA8088101828.902059560641842No Hit
AGCTTCTC7697828927.50745661428619No Hit
GTACAACG6363723522.74015834277162No Hit
CCTGCGGT5370598919.191322404487728No Hit
TCGAGTAA3741820.13371036515044957No Hit
CGCTTCTC3275760.11705615602707685No Hit
AGCTTCTA3229430.11540059771122511No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)