FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences279845171
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG12940020.4623992600536959No Hit
CTATGTTACCCGTGAC4328060.15465909183046078No Hit
GTTGATGACAATCGAA4100510.1465278098366757No Hit
GAAGTTCTGCAGGTGA4049850.1447175231049458No Hit
CGCCCTTCTTGCTCAA3961420.14155756148459678No Hit
CTAACTGGAGCAGGAT3921610.14013498914369332No Hit
TTCTCTCTGGCCCTGA3733680.1334194900222166No Hit
ATGTTTCACAATGCTC3638150.13000581668068162No Hit
CTACATTACCAGGTGA3601790.1287065267958474No Hit
TCGGGTGACACTCGAT3520940.1258174292383984No Hit
AGGAAGCACTTACGAC3414320.12200746533517993No Hit
CATTCTATGACGAGCA3293030.11767328298832787No Hit
CGATATTCTCATGCAT3266830.11673705100310627No Hit
GTTGTGATGGAACCTT3228080.11535235675015454No Hit
AGAACCTTGGGACACA3215620.11490711054649573No Hit
CAGTTGATGTGGGCCT3208250.1146437506330956No Hit
TCCGCCTCTCCTCAAA3169710.11326656052964372No Hit
TAGCAGACTCGGTTTA3107960.11105998323623029No Hit
GTAGCATACAGTTGAA3098810.1107330167223075No Hit
AAGGCGATGTACTTTC3079910.11005764326731941No Hit
AGGTTACTGCCATAAC3048120.10892165796922042No Hit
CAACAACACAACCCGC3018520.10786393023019146No Hit
CTCCAACTGGGACCAA2998420.10714567592091843No Hit
AGTGCATTGGCCAGCT2982310.10657000045214288No Hit
CGCCCTTCTGCTGAGA2977760.1064074105463124No Hit
CATGCAAACCCTTCCA2971170.10617192318819753No Hit
ACGGCCATGTGAACAA2916680.10422477506320808No Hit
CATCAGTGACTGGCAC2875830.10276503931525764No Hit
TTGGCAAACGCAGGAT2836210.10134925644294931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)