FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006206492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006206492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60451668
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGTGTT1709860928.28475965295118No Hit
AGCACTGG1564903725.88685724933181No Hit
CATTACAC1524761725.22282263576251No Hit
GTGCGACA1146897618.972141513117556No Hit
TCAGTGTA1231060.20364367778900658No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)